IL_6GZQ_164

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUC*GCGAGC

Length

10 nucleotides

Bulged bases

6GZQ|1|A1|G|2590, 6GZQ|1|A1|A|2591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_164 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3878

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A1|G|2523
6GZQ|1|A1|C|2524
6GZQ|1|A1|U|2525
6GZQ|1|A1|C|2526
*
6GZQ|1|A1|G|2588
6GZQ|1|A1|C|2589
6GZQ|1|A1|G|2590
6GZQ|1|A1|A|2591
6GZQ|1|A1|G|2592
6GZQ|1|A1|C|2593

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain a1

50S ribosomal protein L32