IL_6GZQ_174

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACGGUGGGAGAGGGU*ACCUGGUCCACCCGUGAC

Length

34 nucleotides

Bulged bases

6GZQ|1|A2|A|648, 6GZQ|1|A2|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A2|G|637
6GZQ|1|A2|A|638
6GZQ|1|A2|C|639
6GZQ|1|A2|G|640
6GZQ|1|A2|G|641
6GZQ|1|A2|U|642
6GZQ|1|A2|G|643
6GZQ|1|A2|G|644
6GZQ|1|A2|G|645
6GZQ|1|A2|A|646
6GZQ|1|A2|G|647
6GZQ|1|A2|A|648
6GZQ|1|A2|G|649
6GZQ|1|A2|G|650
6GZQ|1|A2|G|651
6GZQ|1|A2|U|652
*
6GZQ|1|A2|A|720
6GZQ|1|A2|C|721
6GZQ|1|A2|C|722
6GZQ|1|A2|U|723
6GZQ|1|A2|G|724
6GZQ|1|A2|G|725
6GZQ|1|A2|U|726
6GZQ|1|A2|C|727
6GZQ|1|A2|C|728
6GZQ|1|A2|A|729
6GZQ|1|A2|C|730
6GZQ|1|A2|C|731
6GZQ|1|A2|C|732
6GZQ|1|A2|G|733
6GZQ|1|A2|U|734
6GZQ|1|A2|G|735
6GZQ|1|A2|A|736
6GZQ|1|A2|C|737

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain F2

30S ribosomal protein S6

Chain H2

30S ribosomal protein S8

Chain O2

30S ribosomal protein S15

Chain R2

30S ribosomal protein S18