IL_6GZQ_189

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6GZQ|1|A1|A|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_189 not in the Motif Atlas

Homologous match to IL_9DFE_047

Geometric discrepancy: 0.2729

The information below is about IL_9DFE_047

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6GZQ|1|A1|G|1266
6GZQ|1|A1|A|1267
6GZQ|1|A1|C|1268
*
6GZQ|1|A1|G|1277
6GZQ|1|A1|C|1278

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain Q1

50S ribosomal protein L21