IL_6GZQ_191

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6GZQ|1|A1|A|1924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_191 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.1837

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6GZQ|1|A1|U|1874
6GZQ|1|A1|G|1875
*
6GZQ|1|A1|U|1922
6GZQ|1|A1|G|1923
6GZQ|1|A1|A|1924
6GZQ|1|A1|A|1925

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2