IL_6GZQ_203

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6GZQ|1|A2|A|1469, 6GZQ|1|A2|A|1470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_203 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2729

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6GZQ|1|A2|C|1389
6GZQ|1|A2|A|1390
6GZQ|1|A2|C|1391
*
6GZQ|1|A2|G|1468
6GZQ|1|A2|A|1469
6GZQ|1|A2|A|1470
6GZQ|1|A2|G|1471

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain L2

30S ribosomal protein S12

Chain V2

Ribosome hibernation promoting factor