IL_6H4N_029

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2483

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6H4N|1|A|G|875
6H4N|1|A|C|876
6H4N|1|A|A|877
6H4N|1|A|A|878
6H4N|1|A|G|879
*
6H4N|1|A|C|898
6H4N|1|A|A|899
6H4N|1|A|A|900
6H4N|1|A|C|901
6H4N|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16