IL_6H4N_049

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_049 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0762

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

23

Unit IDs

6H4N|1|A|C|1357
6H4N|1|A|G|1358
6H4N|1|A|A|1359
6H4N|1|A|G|1360
6H4N|1|A|G|1361
*
6H4N|1|A|C|1370
6H4N|1|A|G|1371
6H4N|1|A|U|1372
6H4N|1|A|A|1373
6H4N|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28