IL_6H4N_064

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6H4N|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_064 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6H4N|1|A|C|1686
6H4N|1|A|G|1687
6H4N|1|A|U|1688
6H4N|1|A|A|1689
6H4N|1|A|A|1690
6H4N|1|A|C|1691
*
6H4N|1|A|G|1696
6H4N|1|A|G|1697
6H4N|1|A|A|1698
6H4N|1|A|G|1699
6H4N|1|A|A|1700
6H4N|1|A|A|1701
6H4N|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA