3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H4N_110 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.111
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

6H4N|1|A|U|2847
6H4N|1|A|G|2848
6H4N|1|A|U|2849
6H4N|1|A|A|2850
6H4N|1|A|A|2851
6H4N|1|A|G|2852
*
6H4N|1|A|U|2865
6H4N|1|A|U|2866
6H4N|1|A|G|2867
6H4N|1|A|A|2868
6H4N|1|A|G|2869

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17
Chain P
50S ribosomal protein L19

Coloring options:


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