3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGCC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H4N_125 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.1235
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6H4N|1|a|C|132
6H4N|1|a|U|133
6H4N|1|a|G|134
6H4N|1|a|C|135
6H4N|1|a|C|136
*
6H4N|1|a|G|227
6H4N|1|a|A|228
6H4N|1|a|U|229
6H4N|1|a|G|230

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.056 s