IL_6H4N_135

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_135 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0869

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6H4N|1|a|U|409
6H4N|1|a|G|410
6H4N|1|a|A|411
6H4N|1|a|A|412
6H4N|1|a|G|413
6H4N|1|a|A|414
6H4N|1|a|A|415
6H4N|1|a|G|416
*
6H4N|1|a|U|427
6H4N|1|a|G|428
6H4N|1|a|U|429
6H4N|1|a|A|430
6H4N|1|a|A|431
6H4N|1|a|A|432
6H4N|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4