IL_6H4N_137

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6H4N|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_137 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.087

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6H4N|1|a|G|446
6H4N|1|a|G|447
6H4N|1|a|A|448
6H4N|1|a|G|449
6H4N|1|a|G|450
*
6H4N|1|a|C|483
6H4N|1|a|G|484
6H4N|1|a|U|485
6H4N|1|a|U|486
6H4N|1|a|A|487
6H4N|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16