IL_6H4N_141

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6H4N|1|a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_141 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1089

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6H4N|1|a|C|569
6H4N|1|a|G|570
6H4N|1|a|U|571
6H4N|1|a|A|572
6H4N|1|a|A|573
6H4N|1|a|A|574
6H4N|1|a|G|575
*
6H4N|1|a|C|880
6H4N|1|a|G|881

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17