3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H4N_168 not in the Motif Atlas
Homologous match to IL_5J7L_053
Geometric discrepancy: 0.1287
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6H4N|1|a|C|1158
6H4N|1|a|U|1159
6H4N|1|a|G|1160
6H4N|1|a|C|1161
*
6H4N|1|a|G|1175
6H4N|1|a|A|1176
6H4N|1|a|G|1177
6H4N|1|a|G|1178
6H4N|1|a|A|1179
6H4N|1|a|A|1180
6H4N|1|a|G|1181

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain i
30S ribosomal protein S9
Chain v
Ribosome modulation factor
Chain y
30S ribosomal protein S1

Coloring options:


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