IL_6H4N_184

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_184 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0837

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6H4N|1|A|G|1666
6H4N|1|A|G|1667
6H4N|1|A|A|1668
6H4N|1|A|A|1669
6H4N|1|A|C|1670
6H4N|1|A|U|1671
6H4N|1|A|A|1672
6H4N|1|A|G|1673
6H4N|1|A|G|1674
*
6H4N|1|A|C|1990
6H4N|1|A|U|1991
6H4N|1|A|G|1992
6H4N|1|A|U|1993
6H4N|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14