IL_6HHQ_014
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6HHQ|1|1|A|398, 6HHQ|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_014 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.097
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6HHQ|1|1|G|376
6HHQ|1|1|A|377
6HHQ|1|1|A|378
6HHQ|1|1|C|379
*
6HHQ|1|1|G|390
6HHQ|1|1|A|391
6HHQ|1|1|G|392
6HHQ|1|1|U|393
6HHQ|1|1|G|394
6HHQ|1|1|A|395
6HHQ|1|1|A|396
6HHQ|1|1|A|397
6HHQ|1|1|A|398
6HHQ|1|1|A|399
6HHQ|1|1|G|400
6HHQ|1|1|U|401
6HHQ|1|1|A|402
6HHQ|1|1|C|403
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AM
- 60S ribosomal protein L39
- Chain x
- 60S ribosomal protein L17-A
Coloring options: