IL_6HHQ_026

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.0453

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6HHQ|1|1|C|758
6HHQ|1|1|U|759
6HHQ|1|1|G|760
6HHQ|1|1|A|761
6HHQ|1|1|U|762
6HHQ|1|1|G|763
*
6HHQ|1|1|C|768
6HHQ|1|1|G|769
6HHQ|1|1|G|770
6HHQ|1|1|A|771
6HHQ|1|1|U|772
6HHQ|1|1|G|773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A