IL_6HHQ_097
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 39 nucleotides
- Bulged bases
- 6HHQ|1|1|C|2539, 6HHQ|1|1|G|2549, 6HHQ|1|1|U|2550, 6HHQ|1|1|U|2551, 6HHQ|1|1|A|2554, 6HHQ|1|1|U|2558, 6HHQ|1|1|U|2559, 6HHQ|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HHQ|1|1|A|2529
6HHQ|1|1|G|2530
6HHQ|1|1|C|2531
6HHQ|1|1|U|2532
6HHQ|1|1|G|2533
6HHQ|1|1|G|2534
6HHQ|1|1|A|2535
6HHQ|1|1|A|2536
6HHQ|1|1|U|2537
6HHQ|1|1|U|2538
6HHQ|1|1|C|2539
6HHQ|1|1|A|2540
6HHQ|1|1|U|2541
6HHQ|1|1|U|2542
6HHQ|1|1|U|2543
6HHQ|1|1|U|2544
6HHQ|1|1|C|2545
6HHQ|1|1|C|2546
6HHQ|1|1|A|2547
6HHQ|1|1|C|2548
6HHQ|1|1|G|2549
6HHQ|1|1|U|2550
6HHQ|1|1|U|2551
6HHQ|1|1|C|2552
6HHQ|1|1|U|2553
6HHQ|1|1|A|2554
6HHQ|1|1|G|2555
6HHQ|1|1|C|2556
6HHQ|1|1|A|2557
6HHQ|1|1|U|2558
6HHQ|1|1|U|2559
6HHQ|1|1|C|2560
6HHQ|1|1|A|2561
6HHQ|1|1|A|2562
6HHQ|1|1|G|2563
*
6HHQ|1|1|U|2578
6HHQ|1|1|G|2579
6HHQ|1|1|A|2580
6HHQ|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AA
- 60S ribosomal protein L27-A
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-A
- Chain AQ
- 60S ribosomal protein L43-A
- Chain C
- 40S ribosomal protein S1-A
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
Coloring options: