IL_6HHQ_197

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6HHQ|1|A|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_197 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.1265

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6HHQ|1|A|G|1146
6HHQ|1|A|A|1147
*
6HHQ|1|A|U|1630
6HHQ|1|A|A|1631
6HHQ|1|A|C|1632

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain b

40S ribosomal protein S26-B