IL_6HHQ_218

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_218 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.064

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6HHQ|1|A|G|1540
6HHQ|1|A|G|1541
6HHQ|1|A|G|1542
6HHQ|1|A|A|1543
6HHQ|1|A|U|1544
6HHQ|1|A|A|1545
*
6HHQ|1|A|U|1566
6HHQ|1|A|U|1567
6HHQ|1|A|C|1568
6HHQ|1|A|A|1569
6HHQ|1|A|A|1570
6HHQ|1|A|C|1571

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S18-A

Chain U

40S ribosomal protein S19-A