IL_6HHQ_238
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_238 not in the Motif Atlas
- Homologous match to IL_8C3A_008
- Geometric discrepancy: 0.1025
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6HHQ|1|AR|C|125
6HHQ|1|AR|U|126
6HHQ|1|AR|G|127
*
6HHQ|1|AR|C|141
6HHQ|1|AR|C|142
6HHQ|1|AR|G|143
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain CZ
- 60S ribosomal protein L25
- Chain DJ
- 60S ribosomal protein L35-A
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