IL_6HHQ_247

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

6HHQ|1|AR|G|494

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|AR|C|435
6HHQ|1|AR|A|436
6HHQ|1|AR|G|437
6HHQ|1|AR|A|438
6HHQ|1|AR|G|494
6HHQ|1|AR|G|495
*
6HHQ|1|AR|C|618
6HHQ|1|AR|A|619
6HHQ|1|AR|U|620
6HHQ|1|AR|A|621
6HHQ|1|AR|A|622
6HHQ|1|AR|U|623
6HHQ|1|AR|G|624

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L17-A

Chain DG

60S ribosomal protein L32

Chain DH

60S ribosomal protein L33-A