IL_6HHQ_285

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6HHQ|1|AR|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_285 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1953

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6HHQ|1|AR|G|1262
6HHQ|1|AR|A|1263
6HHQ|1|AR|G|1264
6HHQ|1|AR|U|1265
6HHQ|1|AR|G|1266
*
6HHQ|1|AR|C|1275
6HHQ|1|AR|U|1276
6HHQ|1|AR|C|1277

Current chains

Chain AR

25S ribosomal RNA

Nearby chains