IL_6HHQ_308

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6HHQ|1|AR|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_308 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.0558

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6HHQ|1|AR|C|1918
6HHQ|1|AR|G|1919
6HHQ|1|AR|U|1920
6HHQ|1|AR|A|1921
6HHQ|1|AR|A|1922
6HHQ|1|AR|C|1923
*
6HHQ|1|AR|G|1928
6HHQ|1|AR|G|1929
6HHQ|1|AR|A|1930
6HHQ|1|AR|U|1931
6HHQ|1|AR|A|1932
6HHQ|1|AR|A|1933
6HHQ|1|AR|G|1934

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-B

Chain DR

60S ribosomal protein L43-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA