IL_6HHQ_340
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 6HHQ|1|AR|A|2911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_340 not in the Motif Atlas
- Geometric match to IL_5TBW_111
- Geometric discrepancy: 0.0674
- The information below is about IL_5TBW_111
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
6HHQ|1|AR|U|2891
6HHQ|1|AR|A|2892
*
6HHQ|1|AR|U|2909
6HHQ|1|AR|A|2910
6HHQ|1|AR|A|2911
6HHQ|1|AR|G|2912
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CE
- 60S ribosomal protein L3
- Chain CK
- 60S ribosomal protein L9-A
- Chain CQ
- 60S ribosomal protein L16-A
- Chain DO
- Ubiquitin-60S ribosomal protein L40
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