IL_6HHQ_385

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_385 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.0651

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6HHQ|1|sR|U|117
6HHQ|1|sR|U|118
6HHQ|1|sR|A|119
6HHQ|1|sR|U|120
6HHQ|1|sR|U|121
6HHQ|1|sR|U|122
*
6HHQ|1|sR|A|295
6HHQ|1|sR|U|296
6HHQ|1|sR|U|297
6HHQ|1|sR|C|298
6HHQ|1|sR|A|299

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A