IL_6HHQ_392

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

6HHQ|1|sR|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_392 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.0878

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6HHQ|1|sR|A|265
6HHQ|1|sR|A|266
6HHQ|1|sR|U|267
*
6HHQ|1|sR|A|288
6HHQ|1|sR|U|289

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A