IL_6HHQ_424
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6HHQ|1|sR|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_424 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2644
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6HHQ|1|sR|U|893
6HHQ|1|sR|U|894
6HHQ|1|sR|G|895
6HHQ|1|sR|U|896
6HHQ|1|sR|C|897
6HHQ|1|sR|A|898
6HHQ|1|sR|G|899
*
6HHQ|1|sR|C|910
6HHQ|1|sR|U|911
6HHQ|1|sR|U|912
6HHQ|1|sR|G|913
6HHQ|1|sR|G|914
6HHQ|1|sR|A|915
6HHQ|1|sR|U|916
6HHQ|1|sR|U|917
6HHQ|1|sR|U|918
6HHQ|1|sR|A|919
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- 60S ribosomal protein L2-A
- Chain c4
- 40S ribosomal protein S14-B
- Chain s1
- 40S ribosomal protein S1-A
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