IL_6HHQ_439

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6HHQ|1|sR|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_439 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.11

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

6HHQ|1|sR|U|1272
6HHQ|1|sR|G|1273
6HHQ|1|sR|C|1274
6HHQ|1|sR|A|1275
6HHQ|1|sR|U|1276
*
6HHQ|1|sR|A|1436
6HHQ|1|sR|U|1437
6HHQ|1|sR|G|1438

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d0

40S ribosomal protein S20

Chain d9

40S ribosomal protein S29-A

Chain s3

40S ribosomal protein S3