IL_6HHQ_444

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6HHQ|1|sR|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_444 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.101

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HHQ|1|sR|C|1339
6HHQ|1|sR|U|1340
6HHQ|1|sR|A|1341
6HHQ|1|sR|C|1342
*
6HHQ|1|sR|G|1383
6HHQ|1|sR|A|1384
6HHQ|1|sR|G|1385

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain Rb

Guanine nucleotide-binding protein subunit beta-like protein

Chain c6

40S ribosomal protein S16-A

Chain c7

40S ribosomal protein S17-A

Chain d0

40S ribosomal protein S20