IL_6HHQ_468

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

39 nucleotides

Bulged bases

6HHQ|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|1|G|1230
6HHQ|1|1|A|1231
6HHQ|1|1|C|1232
6HHQ|1|1|G|1233
6HHQ|1|1|G|1234
6HHQ|1|1|U|1235
6HHQ|1|1|G|1236
6HHQ|1|1|G|1237
6HHQ|1|1|C|1238
*
6HHQ|1|1|G|1250
6HHQ|1|1|A|1251
6HHQ|1|1|A|1252
6HHQ|1|1|U|1253
6HHQ|1|1|C|1254
6HHQ|1|1|C|1255
6HHQ|1|1|G|1256
6HHQ|1|1|C|1257
6HHQ|1|1|U|1258
6HHQ|1|1|A|1259
6HHQ|1|1|A|1260
6HHQ|1|1|G|1261
6HHQ|1|1|G|1262
6HHQ|1|1|A|1263
6HHQ|1|1|G|1264
6HHQ|1|1|U|1265
6HHQ|1|1|G|1266
6HHQ|1|1|U|1267
6HHQ|1|1|G|1268
6HHQ|1|1|U|1269
6HHQ|1|1|A|1270
6HHQ|1|1|A|1271
6HHQ|1|1|C|1272
6HHQ|1|1|A|1273
6HHQ|1|1|A|1274
6HHQ|1|1|C|1275
6HHQ|1|1|U|1276
6HHQ|1|1|C|1277
6HHQ|1|1|A|1278
6HHQ|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains