IL_6HHQ_476
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6HHQ|1|A|A|793, 6HHQ|1|A|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_476 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3055
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|A|G|751
6HHQ|1|A|A|752
6HHQ|1|A|A|753
6HHQ|1|A|A|754
6HHQ|1|A|A|755
6HHQ|1|A|A|756
6HHQ|1|A|A|757
6HHQ|1|A|U|758
6HHQ|1|A|U|759
*
6HHQ|1|A|A|791
6HHQ|1|A|U|792
6HHQ|1|A|A|793
6HHQ|1|A|U|794
6HHQ|1|A|U|795
6HHQ|1|A|A|796
6HHQ|1|A|G|797
6HHQ|1|A|C|798
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain K
- 40S ribosomal protein S9-A
- Chain M
- 40S ribosomal protein S11-A
- Chain X
- 40S ribosomal protein S22-A
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