IL_6HHQ_485

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

6HHQ|1|A|U|1370, 6HHQ|1|A|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_485 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2512

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6HHQ|1|A|G|1352
6HHQ|1|A|U|1353
6HHQ|1|A|G|1354
*
6HHQ|1|A|U|1369
6HHQ|1|A|U|1370
6HHQ|1|A|A|1371
6HHQ|1|A|U|1372
6HHQ|1|A|C|1373

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A

Chain V

40S ribosomal protein S20