IL_6HHQ_487

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

6HHQ|1|AR|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_487 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.3385

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6HHQ|1|AR|C|977
6HHQ|1|AR|G|978
6HHQ|1|AR|U|979
6HHQ|1|AR|A|980
6HHQ|1|AR|U|981
6HHQ|1|AR|C|982
*
6HHQ|1|AR|G|1101
6HHQ|1|AR|A|1102
6HHQ|1|AR|A|1103
6HHQ|1|AR|G|1104

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CS

60S ribosomal protein L18-A

Chain DD

60S ribosomal protein L29