IL_6HHQ_489

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_489 not in the Motif Atlas

Homologous match to IL_8P9A_275

Geometric discrepancy: 0.0747

The information below is about IL_8P9A_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|AR|U|1123
6HHQ|1|AR|U|1124
6HHQ|1|AR|U|1125
*
6HHQ|1|AR|A|1133
6HHQ|1|AR|G|1134
6HHQ|1|AR|A|1135

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29