IL_6HHQ_492
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_492 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0545
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HHQ|1|AR|C|2889
6HHQ|1|AR|A|2890
6HHQ|1|AR|U|2891
6HHQ|1|AR|A|2892
*
6HHQ|1|AR|U|2909
6HHQ|1|AR|A|2910
6HHQ|1|AR|A|2911
6HHQ|1|AR|G|2912
6HHQ|1|AR|C|2913
6HHQ|1|AR|G|2914
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CE
- 60S ribosomal protein L3
- Chain CK
- 60S ribosomal protein L9-A
- Chain CQ
- 60S ribosomal protein L16-A
- Chain CX
- 60S ribosomal protein L23-A
- Chain DO
- Ubiquitin-60S ribosomal protein L40
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