IL_6HHQ_494

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_494 not in the Motif Atlas

Homologous match to IL_8P9A_410

Geometric discrepancy: 0.1059

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6HHQ|1|sR|G|703
6HHQ|1|sR|C|704
6HHQ|1|sR|U|705
6HHQ|1|sR|A|706
6HHQ|1|sR|A|707
6HHQ|1|sR|C|708
*
6HHQ|1|sR|G|730
6HHQ|1|sR|C|731
6HHQ|1|sR|G|732
6HHQ|1|sR|A|733
6HHQ|1|sR|A|734
6HHQ|1|sR|C|735

Current chains

Chain sR

18S ribosomal RNA

Nearby chains