IL_6HHQ_497

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

6HHQ|1|sR|G|1228, 6HHQ|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|sR|C|1220
6HHQ|1|sR|A|1221
6HHQ|1|sR|C|1222
6HHQ|1|sR|A|1223
6HHQ|1|sR|A|1224
6HHQ|1|sR|U|1225
6HHQ|1|sR|A|1226
6HHQ|1|sR|A|1227
6HHQ|1|sR|G|1228
6HHQ|1|sR|G|1229
6HHQ|1|sR|A|1230
6HHQ|1|sR|U|1231
6HHQ|1|sR|U|1232
6HHQ|1|sR|G|1233
*
6HHQ|1|sR|C|1252
6HHQ|1|sR|U|1253
6HHQ|1|sR|U|1254
6HHQ|1|sR|G|1255
6HHQ|1|sR|A|1256
6HHQ|1|sR|U|1257
6HHQ|1|sR|U|1258
6HHQ|1|sR|U|1259
6HHQ|1|sR|U|1260
6HHQ|1|sR|G|1261
6HHQ|1|sR|U|1262
6HHQ|1|sR|G|1263

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c2

40S ribosomal protein S12

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31