IL_6HHQ_500

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_500 not in the Motif Atlas

Geometric match to IL_9E6Q_011

Geometric discrepancy: 0.3833

The information below is about IL_9E6Q_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6HHQ|1|1|U|177
6HHQ|1|1|U|178
*
6HHQ|1|1|A|238
6HHQ|1|1|G|239
6HHQ|1|1|U|240
6HHQ|1|1|G|241

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L35-A

Chain AK

60S ribosomal protein L37-A

Chain t

60S ribosomal protein L13-A