IL_6HHQ_501

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_501 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.1055

The information below is about IL_8P9A_397

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6HHQ|1|A|C|443
6HHQ|1|A|C|444
6HHQ|1|A|A|445
6HHQ|1|A|A|446
6HHQ|1|A|U|447
*
6HHQ|1|A|A|460
6HHQ|1|A|G|461

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain K

40S ribosomal protein S9-A

Chain Z

40S ribosomal protein S24-A