IL_6HHQ_511

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_511 not in the Motif Atlas

Homologous match to IL_8P9A_400

Geometric discrepancy: 0.1111

The information below is about IL_8P9A_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6HHQ|1|sR|G|516
6HHQ|1|sR|U|517
6HHQ|1|sR|A|518
*
6HHQ|1|sR|U|533
6HHQ|1|sR|A|534
6HHQ|1|sR|A|535
6HHQ|1|sR|C|536

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s9

40S ribosomal protein S9-A