IL_6I0Y_011

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6I0Y|1|A|A|504, 6I0Y|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I0Y_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0824

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6I0Y|1|A|G|481
6I0Y|1|A|A|482
6I0Y|1|A|A|483
6I0Y|1|A|C|484
*
6I0Y|1|A|G|496
6I0Y|1|A|A|497
6I0Y|1|A|G|498
6I0Y|1|A|U|499
6I0Y|1|A|G|500
6I0Y|1|A|A|501
6I0Y|1|A|A|502
6I0Y|1|A|A|503
6I0Y|1|A|A|504
6I0Y|1|A|A|505
6I0Y|1|A|G|506
6I0Y|1|A|A|507
6I0Y|1|A|A|508
6I0Y|1|A|C|509

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain h

50S ribosomal protein L24

Chain z

Titin