IL_6I0Y_036

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6I0Y|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I0Y_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1374

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6I0Y|1|A|U|1018
6I0Y|1|A|U|1019
6I0Y|1|A|A|1020
6I0Y|1|A|A|1021
6I0Y|1|A|G|1022
6I0Y|1|A|U|1023
6I0Y|1|A|G|1024
*
6I0Y|1|A|C|1140
6I0Y|1|A|U|1141
6I0Y|1|A|A|1142
6I0Y|1|A|A|1143
6I0Y|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13