IL_6I0Y_066

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6I0Y|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I0Y_066 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1326

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6I0Y|1|A|U|1712
6I0Y|1|A|A|1713
6I0Y|1|A|U|1714
6I0Y|1|A|G|1715
6I0Y|1|A|U|1716
6I0Y|1|A|A|1717
6I0Y|1|A|G|1718
*
6I0Y|1|A|U|1742
6I0Y|1|A|G|1743
6I0Y|1|A|A|1744
6I0Y|1|A|A|1745
6I0Y|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains