IL_6I1V_010

3D structure

PDB id

6I1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

C(PSU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I1V_010 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.0847

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6I1V|10|A|C|4
6I1V|10|A|PSU|5
6I1V|10|A|G|6
*
6I1V|10|B|C|13
6I1V|10|B|A|14
6I1V|10|B|G|15

Current chains

Chain A

RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3')

Chain B

RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3')

Nearby chains