IL_6I7V_131

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_131 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1388

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6I7V|1|CA|G|188
6I7V|1|CA|G|189
6I7V|1|CA|A|190
6I7V|1|CA|A|191
6I7V|1|CA|C|192
6I7V|1|CA|U|193
6I7V|1|CA|G|194
*
6I7V|1|CA|C|201
6I7V|1|CA|U|202
6I7V|1|CA|A|203
6I7V|1|CA|A|204
6I7V|1|CA|G|205
6I7V|1|CA|U|206
6I7V|1|CA|A|207
6I7V|1|CA|C|208

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CM

50S ribosomal protein L15

Chain CY

50S ribosomal protein L28