IL_6I7V_273

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6I7V|1|DA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_273 not in the Motif Atlas

Geometric match to IL_1G1X_005

Geometric discrepancy: 0.3251

The information below is about IL_1G1X_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6I7V|1|DA|G|1087
6I7V|1|DA|A|1088
6I7V|1|DA|A|1089
6I7V|1|DA|A|1090
*
6I7V|1|DA|U|1101
6I7V|1|DA|C|1102

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L36 2

Chain DJ

50S ribosomal protein L11