IL_6I7V_277

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_277 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0636

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6I7V|1|DA|A|1262
6I7V|1|DA|U|1263
6I7V|1|DA|A|1264
6I7V|1|DA|A|1265
6I7V|1|DA|G|1266
6I7V|1|DA|U|1267
6I7V|1|DA|A|1268
6I7V|1|DA|A|1269
*
6I7V|1|DA|U|2011
6I7V|1|DA|G|2012
6I7V|1|DA|A|2013
6I7V|1|DA|A|2014
6I7V|1|DA|A|2015
6I7V|1|DA|U|2016
6I7V|1|DA|U|2017

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DE

50S ribosomal protein L4

Chain DT

50S ribosomal protein L22