IL_6I7V_314

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

6I7V|1|DA|U|2111, 6I7V|1|DA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_314 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.1477

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6I7V|1|DA|G|2107
6I7V|1|DA|A|2108
6I7V|1|DA|U|2109
6I7V|1|DA|G|2110
6I7V|1|DA|U|2111
6I7V|1|DA|G|2112
6I7V|1|DA|U|2113
6I7V|1|DA|A|2114
6I7V|1|DA|G|2115
6I7V|1|DA|G|2116
6I7V|1|DA|A|2117
6I7V|1|DA|U|2118
6I7V|1|DA|A|2119
6I7V|1|DA|G|2120
6I7V|1|DA|G|2121
6I7V|1|DA|U|2122
6I7V|1|DA|G|2123
*
6I7V|1|DA|C|2175
6I7V|1|DA|A|2176
6I7V|1|DA|C|2177
6I7V|1|DA|C|2178
6I7V|1|DA|C|2179
6I7V|1|DA|U|2180
6I7V|1|DA|U|2181
6I7V|1|DA|U|2182

Current chains

Chain DA

23S ribosomal RNA

Nearby chains