IL_6I7V_315

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

6I7V|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_315 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1874

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6I7V|1|DA|G|2123
6I7V|1|DA|G|2124
6I7V|1|DA|G|2125
6I7V|1|DA|A|2126
6I7V|1|DA|G|2127
6I7V|1|DA|G|2128
*
6I7V|1|DA|C|2160
6I7V|1|DA|C|2161
6I7V|1|DA|G|2162
6I7V|1|DA|A|2163
6I7V|1|DA|C|2164
6I7V|1|DA|C|2165
6I7V|1|DA|U|2166
6I7V|1|DA|U|2167
6I7V|1|DA|G|2168
6I7V|1|DA|A|2169
6I7V|1|DA|A|2170
6I7V|1|DA|A|2171
6I7V|1|DA|U|2172
6I7V|1|DA|A|2173
6I7V|1|DA|C|2174
6I7V|1|DA|C|2175

Current chains

Chain DA

23S ribosomal RNA

Nearby chains